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Review of Basic Chemistry

Review of Bioorganic Chemistry

Review of Molecular Biology
 
 

Introduction to Genomics Features of genomes coding DNA non-coding DNA Teleological Implications Definitions of the Gene Genomics comparitive functional Genome sequencing projects Bioinformatics (data bases and annotation) Proteomics Structural Biology Phylogenetic Analysis and Evolution Some Basic Tools for Computational Biology Search Techniques for the WWW Bare bones of computer searches Search Engines for the Web   Excel Tutorial Index for ENTREZ and Data Base searches Introduction to the NCBI  Data Bases and ENTREZ The Bookshelf OMIM Introduction to PubMed Sequence Data Bases and Formats The Gene Data Base NCBI Nucleotides Data Base GenBank Flat files and formats Dissection auxin gene The RefSeq Data Base Other Data Bases The NCBI Protein Data Base Cancer Chromosomes OMIA SNP Introduction to Sequence Similarity Searchs and BLAST. Obtaining a FASTA sequence BLAST Queries Understaning Conserved Domains Understanding the BLAST hit ist. The NCBI Structure Data Base (MMDB) and Cn3D. REVIEW:  DNA structure. Visualization of DNA structure. REVIEW: Protein structure. The Protein Data Base (PDB)   NCBI Genome Database and Genome Maps Sequencing and Mapping Gene nomeclature Low resolution mapping recombination mapping break point mapping radiation hybrid mapping High Resolution mapping STSs and ETSs BACs and YACs Sequencing and Contig Assembly Annotation ENTREZ:  Genomic Biology and Map Viewer Organism Resources Map Viewer Genome-wide searches Chromosome-specific searches Maps available Map queries Chromosome Launchpad

Sequence Alignments Theory of optimal alignments Application of Dynamic Programming Matrices of log-odds scores (substitution matrices) Statistics and Significance of the Alignment Computer applications of Smith-Waterson Algorithm LALIGN FASTA PRSS Ndjinn BLAST CLUSTALW Analysis of myoglobins with Biology Workbench BLAST Project Biology Workbench Nucleotide Tools ORF Finder Translator Restriction Sites PCR primers  (Primer 3) Protein Structure databases and Molecular Modeling Motifs, Fingerprints and Families of Proteins PROSITE PFAM FINGERPRINTSCAN SAPS PATTERNMATCH CHIME  Tutorials / Molecular Modeling with RasMol Introduction to CHIME:  DNA Introduction to CHIME:  Hemoglobin PIR and PDB RasMol Other Structure Viewers Protein Explorer CD3 VAST     Comparative Genomics, Phylogeney and Evolution DRAWTREE DRAWGRAM